- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.50:Rossmann fold
- Homology: 3.40.50.10150:B12-dependent dehydatase associated subunit
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1dio | [A2B2C2] | [A2B2C2] | [A2B2C2] | 2.2 | B12:COBALAMIN K:POTASSIUM ION PGO:S-1,2-PROPANEDIOL | |||
1eex | [A2B2C2] | [A2B2C2] | [A2B2C2] | 1.7 | COY:CO-(ADENIN-9-YL-PENTYL)-COBALAMIN K:POTASSIUM ION PGO:S-1,2-PROPANEDIOL | |||
1egm | [A2B2C2] | [A2B2C2] | [A2B2C2] | 1.85 | CNC:CYANOCOBALAMIN K:POTASSIUM ION PGO:S-1,2-PROPANEDIOL | |||
1egv | [A2B2C2] | [A2B2C2] | [A2B2C2] | 1.75 | COY:CO-(ADENIN-9-YL-PENTYL)-COBALAMIN K:POTASSIUM ION PGO:S-1,2-PROPANEDIOL | |||
1iwb | [A2B2C2] | [A2B2C2] | [A2B2C2] | 1.85 | B12:COBALAMIN K:POTASSIUM ION | |||
1iwp | [A2B2C2] | [A2B2C2] | [A2B2C2] | 2.1 | B12:COBALAMIN K:POTASSIUM ION PGO:S-1,2-PROPANEDIOL | |||
1mmf | [ABC] | [ABC] | [ABC] | 2.5 | B12:COBALAMIN K:POTASSIUM ION | |||
1nbw | [A2B2] | [A2B2] | [A2B2] | 2.4 | CA:CALCIUM ION | |||
1uc4 | [A2B2C2] | [A2B2C2] | [A2B2C2] | 1.8 | CNC:CYANOCOBALAMIN K:POTASSIUM ION NH4:AMMONIUM ION PGO:S-1,2-PROPANEDIOL | |||
1uc5 | [A2B2C2] | [A2B2C2] | [A2B2C2] | 2.3 | CNC:CYANOCOBALAMIN K:POTASSIUM ION NH4:AMMONIUM ION PGR:R-1,2-PROPANEDIOL | |||
2d0o | [A2B2] | [A2B2] | [A2B2] | 2 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION SO4:SULFATE ION | |||
2d0p | [A2B2] | [A2B2] | [A2B2] | 3 | CA:CALCIUM ION SO4:SULFATE ION | |||
3auj | [A2B2C2] | [A2B2C2] | [A2B2C2] | 2.1 | B12:COBALAMIN CA:CALCIUM ION GOL:GLYCEROL PO4:PHOSPHATE ION | |||
3brc | [A2] | [A2] | [A2] | 1.6 | MSE:SELENOMETHIONINE PO4:PHOSPHATE ION | |||
3wb0 | [A4] | [A4] | [A4] | 1.91 | FEG:5___sq___-O-[(S)-{[2-(CARBOXYMETHYL)-6-HYDROXY-3,5-DIMETHYLPYRIDIN-4-YL]OXY}(HYDROXY)PHOSPHORYL]GUANOSINE | |||
3wb1 | [A4] | [A4] | [A4] | 2.4 | SO4:SULFATE ION | |||
3wb2 | [A4] | [A4] | [A4] | 2.44 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION YGP:5___sq___-O-[(R)-[(3,6-DIMETHYL-2-OXO-1,2-DIHYDROPYRIDIN-4-YL)OXY](HYDROXY)PHOSPHORYL]GUANOSINE | |||
5d5p | [A2] | [A2] | [A2] | 1.7 | ||||
5d5q | [A2] | [A2] | [A2] | 2.5 | 57O:(4,6-DIHYDROXY-3,5-DIMETHYLPYRIDIN-2-YL)ACETIC ACID | |||
5yrt | [A2B2C2] | [A2B2C2] | [A2B2C2] | 1.7 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN CA:CALCIUM ION CL:CHLORIDE ION K:POTASSIUM ION | |||
5yrv | [A2B2C2] | [A2B2C2] | [A2B2C2] | 1.55 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN CA:CALCIUM ION CL:CHLORIDE ION K:POTASSIUM ION PGO:S-1,2-PROPANEDIOL | |||
5ysh | [A2B2C2] | [A2B2C2] | [A2B2C2] | 1.9 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN CA:CALCIUM ION K:POTASSIUM ION PGO:S-1,2-PROPANEDIOL |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA